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Determination of secondary metabolites of Paenibacillus larvae by deep learning genome-mining strategy
Baş İrem, ÇELİK ALİ, KUMRU SALİH, KALINDAMAR ŞAFAK (09.06.2022 - 12.06.2022) , Yayın Yeri: 8th International Congress of the Molecular Biology Association of Turkey ,12.06.2022
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Predicted virulence factors of Lactococcus garvieae through genomic approach
KUMRU SALİH, KALINDAMAR ŞAFAK, BALTA FİKRİ (19.01.2024 - 21.01.2024) , Yayın Yeri: IX International European Conference on Interdisciplinary Scientific Research ,06.02.2024
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Karadeniz alabalığı’nın (Salmo coruhensis) fry bireylerinde mortalite etmeni Pseudomonas iridis Y-22 suşunun tüm genom dizilenmesi ve biyoinformatik analizleri
Kök Rumeysa,KALINDAMAR ŞAFAK,KUMRU SALİH (13.07.2023 - 15.07.2023) , Yayın Yeri: 25.Ulusal Biyoloji Kongresi ,13.07.2023
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Xenorhabdus bovienii türlerinde bakteriyel sekonder metabolitlerin derin öğrenme genom madenciliği stratejisi ile belirlenmesi
KALINDAMAR ŞAFAK (13.07.2023 - 15.07.2023) , Yayın Yeri: 25.Ulusal Biyoloji Kongresi ,13.07.2023
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Discovery of bacterial secondary metabolites in boron mine tailing ponds using shotgun metagenomics
Baş İrem,YILMAZ SARIÖZLÜ NALAN,YILMAZ CANKILIÇ MERAL,KALINDAMAR ŞAFAK (12.09.2024 - 14.09.2024) , Yayın Yeri: 9th International Congress of the Molecular Biology Association of Turkey ,01.10.2024
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Uncovering bacterial diversity in boron tailing ponds through metagenome-assembled genomes
KALINDAMAR ŞAFAK,YILMAZ SARIÖZLÜ NALAN,YILMAZ CANKILIÇ MERAL (12.09.2024 - 14.09.2024) , Yayın Yeri: 9th International Congress of the Molecular Biology Association of Turkey ,01.10.2024
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| 7 |
The role of selected secreted proteins and regulatory hfq proteins in pathogenesis of virulent Aeromonas hydrophila
Tekedar Hasan Cihad,KALINDAMAR ŞAFAK,Karsi Attila,Abdelhamed Hossam,Kumru Salih,Lawrence Mark L (07.06.2018 - 11.06.2018) , Yayın Yeri: American Society for Microbiology Microbe 2018 ,
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Hybrid genome assembly and annotation of Xanthomonas arboricola pathovar corylina NTM-B-28 strain isolated from hazelnut tree in Turkey
Öksüz Edanur, KUMRU SALİH, Karahan Aynur, KALINDAMAR ŞAFAK (15.05.2023 - 18.05.2023) , Yayın Yeri: 2nd International Molecular Plant Protection Congress ,18.05.2023
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Complete whole genome sequence and genomic analysis of Pseudomonas cerasi NTM-B-29 strain isolated from hazelnut orchard in Turkey
KALINDAMAR ŞAFAK, KUMRU SALİH, Kök Rumeysa, Karahan Aynur (15.05.2023 - 18.05.2023) , Yayın Yeri: 2nd International Molecular Plant Protection Congress ,18.05.2023
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| 10 |
Bioinformatic analysis of genomic islands of the American foulbrood agent Paenibacillus larvae
Carlak Cem, KUMRU SALİH, KALINDAMAR ŞAFAK (09.06.2022 - 12.06.2022) , Yayın Yeri: 8th International Congress of the Molecular Biology Association of Turkey ,12.06.2022
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| 11 |
Secretion systems of Xenorhabdus bacteria associated with entomopathogenic nematodes: A relative analysis
KALINDAMAR ŞAFAK,Kumru Salih,Blom Jochen,HAZIR SELÇUK (27.09.2019 - 29.09.2019) , Yayın Yeri: 7th International Congress of the Molecular Biology Association of Turkey ,27.09.2019
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| 12 |
Comparative genomic analysis of insect-pathogenic Photorhabdus bacteria
Kumru Salih,KALINDAMAR ŞAFAK,Blom Jochen,HAZIR SELÇUK (27.09.2019 - 29.09.2019) , Yayın Yeri: 7th International Congress of the Molecular Biology Association of Turkey ,27.09.2019
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| 13 |
Phagocytic and Bactericidal Properties of B cells in Channel Catfish Exposed to Edwardsiella ictaluri Live Attenuated Vaccine and Wild-Type Strains
Kordon Othan Adef,KALINDAMAR ŞAFAK,Abdelhamed Hossam,Karsi Attila,Pinchuk M Lesya (29.03.2018 - 31.03.2018) , Yayın Yeri: Midsouth Computational Biology Bioinformatics Society MCBIOS XV Annual Bioinformatics Computational Biology Conference ,
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The RNA Chaperone Hfq Is Involved in Stress Response, Metabolism, and Virulence in Edwardsiella ictaluri
Akgul Ali,KALINDAMAR ŞAFAK,Tekedar Hasan Cihad,Abdelhamed Hossam,Ibrahim Iman,Karsi Attila (01.06.2017 - 05.06.2017) , Yayın Yeri: American Society for Microbiology Microbe 2017 ,
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| 15 |
The Effect of Hcp Family Proteins of Type VI Secretion System in Edwardsiella ictaluri Virulence
KALINDAMAR ŞAFAK,Abdelhamed Hossam,Kordon Othan Adef,Janabi Nawar,Lu Jingjun,Tekedar Hasan Cihad,Karsi Attila (01.06.2017 - 05.06.2017) , Yayın Yeri: American Society for Microbiology Microbe 2017 ,
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| 16 |
Construction and evaluation of an Edwardsiella ictaluri virulence protein F mutant
KALINDAMAR ŞAFAK,Abdelhamed Hossam,Tekedar Hasan Cihad,Karsi Attila (26.06.2016 - 30.06.2016) , Yayın Yeri: 2nd International Conference of Fish Shellfish Immunology ,
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| 17 |
Comparative reverse vaccinology analysis of Aeromonas hydrophila ML09-119 genome
Tekedar Hasan Cihad,KALINDAMAR ŞAFAK,Karsi Attila,Lawrence Mark L (03.03.2016 - 05.03.2016) , Yayın Yeri: Midsouth Computational Biology Bioinformatics Society MCBIOS XIII Annual Bioinformatics Computational Biology Conference ,
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| 18 |
Evaluation of growth deficient Edwardsiella ictaluri mutants as vaccine candidate genes
KALINDAMAR ŞAFAK,Abdelhamed Hossam,Tekedar Hasan Cihad,Lawrence Mark L,Karsi Attila (30.05.2016 - 02.06.2016) , Yayın Yeri: American Society for Microbiology 115th General Meeting ,
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| 19 |
Identification of Edwardsiella ictaluri genes involved in growth
KALINDAMAR ŞAFAK,Fuqua Katty,Lu Jingjun,Tekedar Hasan Cihad,Banes Michelle,Lawrence Mark L,Karsi Attila (06.03.2014 - 08.03.2014) , Yayın Yeri: Midsouth Computational Biology Bioinformatics Society MCBIOS XI Annual Bioinformatics Computational Biology Conference ,
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Virulence and efficacy of an Edwardsiella ictaluri mutants in catfish fry
Birch Julie,KALINDAMAR ŞAFAK,Banes Michelle,Tekedar Hasan Cihad,Lawrence Mark L,Karsi Attila (01.08.2013 - 04.08.2013) , Yayın Yeri: Merial NIH Veterinary Scholars Symposia ,
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| 21 |
Comparative genomics analysis of Aeromonas hydrophila strains
Tekedar Hasan Cihad,KALINDAMAR ŞAFAK,Karsi Attila,Lawrence Mark L (03.03.2016 - 05.03.2016) , Yayın Yeri: Midsouth Computational Biology Bioinformatics Society MCBIOS XI Annual Bioinformatics Computational Biology Conference ,
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| 22 |
Functional and Apoptotic Changes of Catfish B Cells after Vaccination
Kordon Othan Adef,KALINDAMAR ŞAFAK,Abdelhamed Hossam,Tan Wei,Pinchuk M Lesya,Karsi Attila (12.07.2018 - 15.07.2018) , Yayın Yeri: 4th International Congress on Veterinary and Animal Sciences (ICVAS) ,
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| 23 |
Edwardsiella ictaluri evpP is essential for apoptosis and necrosis in catfish macrophages
KALINDAMAR ŞAFAK,Kordon Othan Adef,Abdelhamed Hossam,Pinchuk M Lesya,Karsi Attila (12.07.2018 - 15.07.2018) , Yayın Yeri: 4th International Congress on Veterinary and Animal Sciences (ICVAS) ,
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| 24 |
Characterization of Type VI Secretion System in Edwardsiella ictaluri
KALINDAMAR ŞAFAK,Abdelhamed Hossam,Kordon Othan Adef,Lu Jingjun,Kumru Salih,Tekedar Hasan Cihad,Pinchuk M Lesya,Karsi Attila (19.10.2017 - 21.10.2017) , Yayın Yeri: American Society for Microbiology South Central Branch Meeting Annual Meeting ,
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| 25 |
Vaccine efficacy of growth deficient Edwardsiella ictaluri mutants
KALINDAMAR ŞAFAK,Abdelhamed Hossam,Tekedar Hasan Cihad,Lawrence Mark L,Karsi Attila (12.09.2014 - 13.09.2014) , Yayın Yeri: American Society for Microbiology South Central Branch Meeting Annual Meeting ,
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| 26 |
Identification of the Edwardsiella ictaluri genes causing impaired growth
KALINDAMAR ŞAFAK,Fuqua Katty,Lu Jingjun,Lawrence Mark L,Karsi Attila (26.10.2012 - 27.10.2012) , Yayın Yeri: American Society for Microbiology South Central Branch Meeting Annual Meeting ,
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